| Lords Creek | Essex, MA | 5.3 miles | SE |
| The Thorofare | Essex, MA | 5.5 miles | SE |
| Stacy Creek | Essex, MA | 6.4 miles | SE |
| Third Creek | Essex, MA | 6.4 miles | SE |
| Choate Island Channel | Essex, MA | 11.3 miles | SE |
| Hampton Harbor Inlet | Rockingham, NH | 11.3 miles | NE |
| Beverly Channel | Essex, MA | 15.1 miles | SE |
| Rams Horn Channel | Essex, MA | 15.4 miles | SE |
| Manchester Channel | Essex, MA | 15.5 miles | SE |
| Salem Channel | Essex, MA | 15.8 miles | SE |
| South Channel | Essex, MA | 16.2 miles | SE |
| Salem Channel | Essex, MA | 16.4 miles | SE |
| North Channel | Essex, MA | 16.5 miles | SE |
| Blynman Canal | Essex, MA | 16.5 miles | SE |
| Eagle Island Channel | Essex, MA | 16.9 miles | SE |
| Oxbow Cut | Rockingham, NH | 17.1 miles | NW |
| Marblehead Channel | Essex, MA | 17.4 miles | SE |
| South Channel | Essex, MA | 17.4 miles | SE |
| Childrens Island Channel | Essex, MA | 17.5 miles | SE |
| Dog Bar Channel | Essex, MA | 17.7 miles | SE |
| Western Channel | Suffolk, MA | 21.7 miles | SW |
| Lower Narrows | Rockingham, NH | 22.1 miles | NE |
| Upper Narrows | Rockingham, NH | 22.2 miles | NW |
| Black Rock Channel | Essex, MA | 22.4 miles | SW |
| Furber Strait | Strafford, NH | 23.5 miles | NE |
| Boston Inner Harbor | Suffolk, MA | 26.4 miles | SW |
| Little Mystic Channel | Suffolk, MA | 26.6 miles | SW |
| Boston North Channel | Suffolk, MA | 27.5 miles | SE |
| Boston South Channel | Suffolk, MA | 28.1 miles | SE |
| Hypocrite Channel | Suffolk, MA | 28.2 miles | SE |
| Governors Channel (historical) | Suffolk, MA | 28.2 miles | SW |
| Fort Point Channel | Suffolk, MA | 28.3 miles | SW |
| Boston Main Channel | Suffolk, MA | 28.4 miles | SW |
| Reserved Channel | Suffolk, MA | 28.9 miles | SW |
| President Roads | Suffolk, MA | 28.9 miles | SW |
| Ramshead Ditch | York, ME | 29.3 miles | NE |
| Nubble Channel | Suffolk, MA | 29.5 miles | SW |
| The Narrows | Suffolk, MA | 29.7 miles | SW |
| Lower Narrows | Strafford, NH | 30.4 miles | NE |
| Upper Narrows | Strafford, NH | 30.7 miles | NE |
| Nantasket Roads | Norfolk, MA | 31 miles | SW |
| Sculpin Ledge Channel | Essex, MA | 31.3 miles | SW |
| Squantum Channel | Norfolk, MA | 31.6 miles | SW |
| Wollaston Channel | Norfolk, MA | 33.1 miles | SW |
| The Gangway | Norfolk, MA | 34.6 miles | SE |
| Cut River | Plymouth, MA | 50 miles | SE |
| Dug Way | Plymouth, MA | 50 miles | SE |
| Great Wood Island River | Plymouth, MA | 50.7 miles | SE |
| Plymouth Harbor Channel | Plymouth, MA | 55.8 miles | SE |
| Goose Point Channel | Plymouth, MA | 55.9 miles | SE |
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